You are here: Home Album hagfish readme.2.txt

readme.2.txt

readme.2.txt — Plain Text, 1 kB (1203 bytes)

File contents

1. Eburgeri.misjoin.corrected.19cluster.genome.fa - A misjoining corrected and HiC scaffolded genome assembly.
md5: 9cd8d80a8c04edd94d726aa3f48295ff

2. Eburgeri.misjoin.corrected.19cluster_3.2.93.gtf - A gene annotation file with every entry's coordination having been transformed to the misjoining corrected and HiC scaffolded genome assembly.
md5: febcd4714c3f5534174de70cc42c10bb

3. Eburgeri.misjoin.19cluster.liftover.bed - A bed format description of the coordination transformation rule from current assembly to the misjoining corrected and HiC scaffolded genome assembly.
md5: e52e667854472621b9f24397a2a3bac7
Columns 1-3 denote the interval in the original draft assembly.
Columns 4-6 denote the corresponding interval after correcting those misjoined scaffolds.
Columns 7-8 denote the corresponding interval after correcting those misjoined scaffolds and assembling them into 19 HiC clusters.
Column 9 denotes the sequence orientation of intervals in the final HiC scaffolded genome assembly. Forward means no change. ReverseComplementary means the sequences from the original interval have been reverse complemented in the corresponding interval of the final HiC scaffolded genome assembly.